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-rw-r--r--2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc7
-rw-r--r--2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex29
-rw-r--r--2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex98
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diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc b/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc
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+++ b/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc
@@ -0,0 +1,7 @@
+PAPERS += stonge/stonge.dvi
+
+## Add any additional .tex or .eps files below:
+stonge/stonge.dvi stonge/stonge-proc.dvi: \
+ stonge/stonge.tex \
+ stonge/stonge-abstract.tex
+
diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex
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@@ -0,0 +1,29 @@
+
+% Registration SeqHoundRWeb.py: a Python-based interface to a
+% comprehensive online bioinformatics resource
+% Peter St. Onge (pete@seul.org)
+
+In the post-genomic era, getting useful
+answers to challenging biological questions
+often demands significant expertise and
+resources not only to acquire the requisite
+biological data but also to manage it. The
+storage required to maintain a workable
+genomic or proteomic database is usually out
+of reach for most biologists. Some toolsets
+already exist to facilitate some aspects of
+data analysis, and others for access to
+particular data stores (e.g., NCBI Toolkit),
+but there is a substantial learning curve to
+these tools and installation is often
+non-trival. SeqHoundRWeb.py grew out of a
+common frustration in bioinformatics---the
+initiate bioinformaticist often has
+substantial biological knowledge, but little
+experience in computing; Python is often held
+up as a good first scripting language to
+learn, and in our experience new users can be
+productive fairly rapidly.
+
+
+
diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex
new file mode 100644
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+++ b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex
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+% The file must begin with this \documentclass declaration. You can
+% give one of three different options which control how picky LaTeX
+% is when typesetting:
+%
+% galley - All ``this doesn't fit'' warnings are suppressed, and
+% references are disabled (the key will be printed as a
+% reminder). Use this mode while writing.
+%
+% proof - All ``this doesn't fit'' warnings are active, as are
+% references. Overfull hboxes make ugly black blobs in
+% the margin. Use this mode to tidy up formatting after
+% you're done writing. (Same as article's ``draft'' mode.)
+%
+% final - As proof, but the ugly black blobs are turned off. Use
+% this to render PDFs or PostScript to give to other people,
+% when you're completely done. (As with article, this is the
+% default.)
+%
+% You can also use the leqno, fleqn, or openbib options to article.cls
+% if you wish. None of article's other options will work.
+
+%%%
+%%% PLEASE CHANGE 'galley' to 'final' BEFORE SUBMITTING. THANKS!
+%%% (to submit: "make clean" in the toplevel directory; tar and gzip *only* your directory;
+%%% email the gzipped tarball to papers@linuxsymposium.org.)
+%%%
+\documentclass[galley]{ols}
+\usepackage{url}
+\usepackage{zrl}
+
+% The following package is not required, but is a handy way to put PDF and EPS graphics
+% into your paper using the \includegraphics command.
+\ifpdf
+\usepackage[pdftex]{graphicx}
+\else
+\usepackage{graphicx}
+\fi
+
+
+% Here in the preamble, you may load additional packages, or
+% define whatever macros you like, with the following exceptions:
+%
+% - Do not mess with the page layout, either by hand or with packages
+% (e.g., typearea, geometry).
+% - Do not change the principal fonts, either by hand or with packages.
+% - Do not use \pagestyle, or load any page header-related packages.
+% - Do not redefine any commands having to do with article titles.
+% - If you are using something that is not part of the standard
+% tetex-2 distribution, please make a note of whether it's on CTAN,
+% or include a copy with your submission.
+%
+
+\begin{document}
+
+% Mandatory: article title specification.
+% Do not put line breaks or other clever formatting in \title or
+% \shortauthor; these are moving arguments.
+
+\title{SeqHoundRWeb.py: a Python-based interface to a comprehensive online bioinformatics resource}
+\subtitle{ } % Subtitle is optional.
+%\date{24 Jan 2005} % You can put a fixed date in if you wish,
+ % allow LaTeX to use the date of typesetting,
+ % or use \date{} to have no date at all.
+ % Whatever you do, there will not be a date
+ % shown in the proceedings.
+
+\shortauthor{Peter St.~Onge} % Just you and your coauthors' names.
+% for example, \shortauthor{A.N.\ Author and A.\ Nother}
+% or perchance \shortauthor{Smith, Jones, Black, White, Gray, \& Greene}
+
+\author{% Authors, affiliations, and email addresses go here, like this:
+Peter St.~Onge \\
+{\itshape Your affiliation}\\
+{\ttfamily\normalsize your-address@example.com}\\
+% \and
+% Bob \\
+% {\itshape Bob's affiliation.}\\
+% {\ttfamily\normalsize bob@example.com}\\
+} % end author section
+
+\maketitle
+
+\begin{abstract}
+% Article abstract goes here.
+\input{stonge-abstract.tex}
+\end{abstract}
+
+% Body of your article goes here. You are mostly unrestricted in what
+% LaTeX features you can use; however, the following will not work:
+% \thispagestyle
+% \marginpar
+% table of contents
+% list of figures / tables
+% glossaries
+% indices
+
+\end{document}
+
personal git repositories of Harald Welte. Your mileage may vary