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Diffstat (limited to '2005/flow-accounting-ols2005/OLS2005/stonge')
3 files changed, 134 insertions, 0 deletions
diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc b/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc new file mode 100644 index 0000000..3964b7a --- /dev/null +++ b/2005/flow-accounting-ols2005/OLS2005/stonge/Makefile.inc @@ -0,0 +1,7 @@ +PAPERS += stonge/stonge.dvi + +## Add any additional .tex or .eps files below: +stonge/stonge.dvi stonge/stonge-proc.dvi: \ + stonge/stonge.tex \ + stonge/stonge-abstract.tex + diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex new file mode 100644 index 0000000..6d94b44 --- /dev/null +++ b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge-abstract.tex @@ -0,0 +1,29 @@ + +% Registration SeqHoundRWeb.py: a Python-based interface to a +% comprehensive online bioinformatics resource +% Peter St. Onge (pete@seul.org) + +In the post-genomic era, getting useful +answers to challenging biological questions +often demands significant expertise and +resources not only to acquire the requisite +biological data but also to manage it. The +storage required to maintain a workable +genomic or proteomic database is usually out +of reach for most biologists. Some toolsets +already exist to facilitate some aspects of +data analysis, and others for access to +particular data stores (e.g., NCBI Toolkit), +but there is a substantial learning curve to +these tools and installation is often +non-trival. SeqHoundRWeb.py grew out of a +common frustration in bioinformatics---the +initiate bioinformaticist often has +substantial biological knowledge, but little +experience in computing; Python is often held +up as a good first scripting language to +learn, and in our experience new users can be +productive fairly rapidly. + + + diff --git a/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex new file mode 100644 index 0000000..5a45736 --- /dev/null +++ b/2005/flow-accounting-ols2005/OLS2005/stonge/stonge.tex @@ -0,0 +1,98 @@ +% The file must begin with this \documentclass declaration. You can +% give one of three different options which control how picky LaTeX +% is when typesetting: +% +% galley - All ``this doesn't fit'' warnings are suppressed, and +% references are disabled (the key will be printed as a +% reminder). Use this mode while writing. +% +% proof - All ``this doesn't fit'' warnings are active, as are +% references. Overfull hboxes make ugly black blobs in +% the margin. Use this mode to tidy up formatting after +% you're done writing. (Same as article's ``draft'' mode.) +% +% final - As proof, but the ugly black blobs are turned off. Use +% this to render PDFs or PostScript to give to other people, +% when you're completely done. (As with article, this is the +% default.) +% +% You can also use the leqno, fleqn, or openbib options to article.cls +% if you wish. None of article's other options will work. + +%%% +%%% PLEASE CHANGE 'galley' to 'final' BEFORE SUBMITTING. THANKS! +%%% (to submit: "make clean" in the toplevel directory; tar and gzip *only* your directory; +%%% email the gzipped tarball to papers@linuxsymposium.org.) +%%% +\documentclass[galley]{ols} +\usepackage{url} +\usepackage{zrl} + +% The following package is not required, but is a handy way to put PDF and EPS graphics +% into your paper using the \includegraphics command. +\ifpdf +\usepackage[pdftex]{graphicx} +\else +\usepackage{graphicx} +\fi + + +% Here in the preamble, you may load additional packages, or +% define whatever macros you like, with the following exceptions: +% +% - Do not mess with the page layout, either by hand or with packages +% (e.g., typearea, geometry). +% - Do not change the principal fonts, either by hand or with packages. +% - Do not use \pagestyle, or load any page header-related packages. +% - Do not redefine any commands having to do with article titles. +% - If you are using something that is not part of the standard +% tetex-2 distribution, please make a note of whether it's on CTAN, +% or include a copy with your submission. +% + +\begin{document} + +% Mandatory: article title specification. +% Do not put line breaks or other clever formatting in \title or +% \shortauthor; these are moving arguments. + +\title{SeqHoundRWeb.py: a Python-based interface to a comprehensive online bioinformatics resource} +\subtitle{ } % Subtitle is optional. +%\date{24 Jan 2005} % You can put a fixed date in if you wish, + % allow LaTeX to use the date of typesetting, + % or use \date{} to have no date at all. + % Whatever you do, there will not be a date + % shown in the proceedings. + +\shortauthor{Peter St.~Onge} % Just you and your coauthors' names. +% for example, \shortauthor{A.N.\ Author and A.\ Nother} +% or perchance \shortauthor{Smith, Jones, Black, White, Gray, \& Greene} + +\author{% Authors, affiliations, and email addresses go here, like this: +Peter St.~Onge \\ +{\itshape Your affiliation}\\ +{\ttfamily\normalsize your-address@example.com}\\ +% \and +% Bob \\ +% {\itshape Bob's affiliation.}\\ +% {\ttfamily\normalsize bob@example.com}\\ +} % end author section + +\maketitle + +\begin{abstract} +% Article abstract goes here. +\input{stonge-abstract.tex} +\end{abstract} + +% Body of your article goes here. You are mostly unrestricted in what +% LaTeX features you can use; however, the following will not work: +% \thispagestyle +% \marginpar +% table of contents +% list of figures / tables +% glossaries +% indices + +\end{document} + |